Logo

ModularImageAnalysis (MIA)

MIA

  • Guides
  • Modules
  • Publications
  • Get involved
  • About
  • Guides
  • Modules
  • Publications
  • Get involved
  • About
Modules
  • Core
  • Images
  • Input output
  • Objects
    • Convert
    • Detect
    • Filter
    • Measure
      • Intensity
      • Miscellaneous
      • Spatial
        • Calculate nearest neighbour
        • Measure distances to neighbours
        • Measure object centroid
        • Measure object curvature
        • Measure object limits
        • Measure object overlap
        • Measure object shape
        • Measure object width
        • Measure relative orientation
        • Measure specific width
        • Measure track motion
    • Process
    • Relate
    • Track
    • Transform
  • Script
  • System
  • Visualisation
  • Workflow

Spatial

Modules performing spatial-based measurements on objects in the workspace.

Calculate nearest neighbour

Measures the shortest distance between all objects in the specified input collection and all other objects in the same, or a different collection.

Measure distances to neighbours

Measures distances to the closest N objects in the specified input collection.

Measure object centroid

Measure mean XYZ centroid for all objects in an object colleciton.

Measure object curvature

Fits a 2D spline to the backbone of objects.

Measure object limits

Measures the XYZ spatial limits of each object relative to the origin (x = 0, y = 0, z = 0) of the original image.

Measure object overlap

Calculates the overlap of each object in an object collection with any object from another collection.

Measure object shape

Measures various spatial metrics for each object in a specified object collection from the workspace.

Measure object width

Measure relative orientation

Measures the orientation of each object relative to a specific point.

Measure specific width

Measures the width of the object along the axis passing through two specified reference points.

Measure track motion

Measures various motion metrics for tracked objects.

Logo

ModularImageAnalysis (MIA)

MIA

Wolfson Bioimaging Facility

Developed in the Wolfson Bioimaging Facility at the University of Bristol.

  • Explore
  • GitHub
  • Publications
  • ImageJ
  • Learn
  • About
  • Guides
  • YouTube
  • Examples
  • Follow
  • Twitter
  • Releases