Script

Modules for running code directly witin a workflow. Both single commands and full scripts (e.g. macro, Jython and Groovy) can be implemented.

Run macro

Run a specific ImageJ macro once (as opposed to the "Run macro on objects" module, which runs once per object).

Run macro on objects

Run a specific ImageJ macro once per object from a specified input object collection (as opposed to the "Run macro" module, which runs once per analysis run).

Run script

Run Fiji-compatible scripts directly within a MIA workflow.

Run single command

Run a single command on an image from the workspace.