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ModularImageAnalysis (MIA)

MIA

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Modules
  • Core
  • Images
  • Input output
    • Export ACC dataset
    • Export VOC annotations
    • Extract metadata
    • Load image
    • Load image 2
    • Load objects
    • Load objects from ROIs
    • Save image
    • Save image (generic)
    • Save objects as ROIs
    • Save overlay as ROIs
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Input output

Modules loading or saving files to the filesystem.

Export ACC dataset

Exports objects and associated measurements in the Advanced Cell Classifier (ACC) format.

Export VOC annotations

Extract metadata

Metadata values can be extracted from a variety of sources and assigned to the current workspace.

Load image

Load image into MIA workspace.

Load image 2

In development image loader using ImgLib2.

Load objects

Load centroid coordinates of pre-detected objects from file.

Load objects from ROIs

Save image

Save an image/stack from the workspace to file.

Save image (generic)

Save an image/stack from the workspace to file.

Save objects as ROIs

Save overlay as ROIs

Saves image overlay as a zipped set of ROIs.

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ModularImageAnalysis (MIA)

MIA

Wolfson Bioimaging Facility

Developed in the Wolfson Bioimaging Facility at the University of Bristol.

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