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ModularImageAnalysis (MIA)

MIA

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Modules
  • Core
  • Images
  • Input output
  • Objects
  • Script
  • System
  • Visualisation
  • Workflow

Modules

All operations are performed using dedicated modules. Typically, a module will perform one specific task, such as loading an image or measuring the shapes of objects.

Core

Required modules for input and output control. Each workflow contains one copy of each module.

See modules
Images

Modules dealing primarily with images. These operations typically take images as inputs and may output new images or update existing ones.

See modules
Input output

Modules loading or saving files to the filesystem.

See modules
Objects

Modules dealing primarily with objects. These include object detection, measurements and operations leading to changes in existing objects.

See modules
Script

Modules for running code directly witin a workflow. Both single commands and full scripts (e.g. macro, Jython and Groovy) can be implemented.

See modules
System

Operations handling MIA properties such as memory and global variables.

See modules
Visualisation

Modules primarily concerned with generating and displaying images. These include adding overlay elements and plotting data.

See modules
Workflow

Modules capable of controlling the order of module execution. For example, skipping specific modules if certain criteria are met.

See modules
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ModularImageAnalysis (MIA)

MIA

Wolfson Bioimaging Facility

Developed in the Wolfson Bioimaging Facility at the University of Bristol.

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