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ModularImageAnalysis (MIA)

MIA

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Modules
  • Core
  • Images
  • Input output
  • Objects
    • Convert
    • Detect
    • Filter
    • Measure
    • Process
      • Create bounding boxes
      • Create distance bands
      • Create skeleton
      • Extract object cross section
      • Extract object edges
      • Fit Gaussian 2D
      • Fit active contours
      • Fit concave hull 2D
      • Fit convex hull 2D
      • Fit ellipse
      • Fit ellipsoid
      • Fit longest chord
      • Get local object region
      • Get object surface
      • Grow objects
    • Relate
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    • Transform
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Process

Operations capable of creating new objects from existing ones. For example, fitting ellipsoids or creating projections along an axis.

Create bounding boxes

Creates a solid bounding box for each input object.

Create distance bands

Create skeleton

Creates and measures the skeletonised form of specified input objects.

Extract object cross section

Extracts XY-plane cross-sections of specified objects.

Extract object edges

Extracts edge and interior objects for each object in a specified set.

Fit Gaussian 2D

Gaussian spot fitting.

Fit active contours

Uses active contours to fit a 2D concave hull to specified objects.

Fit concave hull 2D

Fits a 2D concave hull to all objects in a collection.

Fit convex hull 2D

Fit 2D convex hull to a 2D object.

Fit ellipse

Fit ellipses to all objects in a collection using ImageJ's built-in ellipse fitter.

Fit ellipsoid

Fit ellipsoids to all objects in a collection using "<a href="https://imagej.

Fit longest chord

Measures the longest chord of each object in a specified object collection from the workspace.

Get local object region

Creates a local object region (sphere or circle) for each object in a specified object collection.

Get object surface

Create surface objects for each input object.

Grow objects

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ModularImageAnalysis (MIA)

MIA

Wolfson Bioimaging Facility

Developed in the Wolfson Bioimaging Facility at the University of Bristol.

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