Registration
Modules performing alignment of images within a stack to account for sample drift or other motion.
Apply slice-by-slice (2D) affine-based image registration to a multi-dimensional stack.
Affine (SIFT)Apply slice-by-slice (2D) affine-based image registration to a multi-dimensional stack.
Affine (block matching)Apply slice-by-slice (2D) affine-based image registration to a multi-dimensional stack.
Affine (fixed transform) Affine (manual)Apply 2D affine transforms to align images from the workspace to other images from the workspace using manually-selected reference points.
Affine (object centroids)Apply slice-by-slice (2D) affine-based image registration to a multi-dimensional stack.
Elastix registration Register imagesDEPRECATED: Please use separate automatic and manual modules instead.
Unwarp (automatic)Apply slice-by-slice (2D) B-spline unwarping-based image registration to a multi-dimensional stack.
Unwarp (manual)Apply 2D B-spline unwarping transforms to align images from the workspace to other images from the workspace using manually-selected reference points.