Modules

Registration

Modules performing alignment of images within a stack to account for sample drift or other motion.

Affine (MOPS)

Apply slice-by-slice (2D) affine-based image registration to a multi-dimensional stack.

Affine (SIFT)

Apply slice-by-slice (2D) affine-based image registration to a multi-dimensional stack.

Affine (block matching)

Apply slice-by-slice (2D) affine-based image registration to a multi-dimensional stack.

Affine (fixed transform)

Affine (manual)

Apply 2D affine transforms to align images from the workspace to other images from the workspace using manually-selected reference points.

Affine (object centroids)

Apply slice-by-slice (2D) affine-based image registration to a multi-dimensional stack.

Register images

DEPRECATED: Please use separate automatic and manual modules instead.

Unwarp (automatic)

Apply slice-by-slice (2D) B-spline unwarping-based image registration to a multi-dimensional stack.

Unwarp (manual)

Apply 2D B-spline unwarping transforms to align images from the workspace to other images from the workspace using manually-selected reference points.