Convert 3D stack (switch Z and T)
Ensures 3D stacks (or 4D with multiple channels) are of the expected type (timeseries or Z-stack).
Description
Ensures 3D stacks (or 4D with multiple channels) are of the expected type (timeseries or Z-stack). This module verifies the singular dimension of a 3D stack is correct for the specified output type (e.g. single slice when dealing with timeseries). Any stacks which are not in the expected order have their T and Z axes swapped.
Parameters
| Parameter | Description |
|---|---|
| Input image | Image from workspace to test T and Z inversion of. |
| Apply to input image | When selected, the post-operation image will overwrite the input image in the workspace. Otherwise, the image will be saved to the workspace with the name specified by the "Output image" parameter. |
| Output image | If "Apply to input image" is not selected, the post-operation image will be saved to the workspace with this name. |
| Mode | Controls the expected stack output type. Any input stacks which do not match this format are updated to give the expected order. Choices are: Output timeseries, Output Z-stack. |