Apply DeepImageJ model
Uses DeepImageJ to run Tensorflow and Pytorch models from the BioImage Model Zoo.
Description
Uses DeepImageJ to run Tensorflow and Pytorch models from the BioImage Model Zoo. This module will detect and run any models already installed in the active copy of Fiji. For more information on DeepImageJ and the BioImage Model Zoo, please go to DeepImageJ and BioImage Model Zoo.
Parameters
| Parameter | Description |
|---|---|
| Input image | Image from the workspace to apply deep learning model to. |
| Output image | Final image generated by model, which will be stored in the workspace with this name. |
| Model | Model to apply to input image. This can be any model currently installed in MIA. When using MIA's GUI, the available modules will automatically appear as options. |
| Use postprocessing | If post-processing routines are available for the chosen model this option will be visible. Note: If pre-processing routines are available, these will always be applied. |
| Patch size |