ModularImageAnalysis

Modular Image Analysis

A Fiji plugin providing a modular framework for assembling image and object analysis workflows

MIAMIA

Extensive

Over 200 modules covering a wide range of image and object analysis processes such as transform, filtering, detection, measurement and visualisation

Compatible

Designed with out-of-the-box support for spatially-calibrated 5D images, yielding image and object measurements in both pixel and physical units

MIA
ImageJFijiBio-FormatsTrackMate

Integrates with key ImageJ plugins such as Bio-Formats, TrackMate and Weka Trainable Segmentation

Efficient

MIA's modular design allows for efficient, automated, and high throughput image analysis

Automated

Workflows can be automated from initial image loading through processing, object detection, measurement extraction, visualisation, and data exporting

High throughput

Workflows are, by default, compatible with batch processing multiple files within a single folder

Memory Efficient

Dense spatial object data can be stored in a compressed quadtree coordinate structure to significantly reduce memory usage

MIA batch processing

Extensible

Functionality can be extended via integration with SciJava's scripting interface or with Java modules that extend the core MIA framework

For you

Documented and ready to use for all your image analysis needs