ModularImageAnalysis
Modular Image Analysis
A Fiji plugin providing a modular framework for assembling image and object analysis workflows
Extensive
Near 200 modules covering a wide range of image and object analysis processes such as transform, filtering, detection, measurement and visualisation
Compatible
Designed with out-of-the-box support for spatially-calibrated 5D images, yielding image and object measurements in both pixel and physical units
Integrates with key ImageJ plugins such as Bio-Formats, TrackMate and Weka Trainable Segmentation
Efficient
MIA's modular design allows for efficient, automated, and high throughput image analysis
Automated
Workflows can be automated from initial image loading through processing, object detection, measurement extraction, visualisation, and data exporting
High throughput
Workflows are, by default, compatible with batch processing multiple files within a single folder
Memory Efficient
Dense spatial object data can be stored in a compressed quadtree coordinate structure to significantly reduce memory usage
Extensible
Functionality can be extended via integration with SciJava's scripting interface or with Java modules that extend the core MIA framework
For you
Documented and ready to use for all your image analysis needs